Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015932763.1_cds_XP_016479211.1_70774
CDS Infomation

[gene=LOC107800534] [db_xref=GeneID:107800534] [protein=pentatricopeptide repeat-containing protein At1g50270-like] [protein_id=XP_016479211.1] [location=1506..3344] [gbkey=CDS]
Sequence

ATGCTACAGCGCTCATTCGACTCTCCACCACTTTTTCCAGCTTTGAATGAACAGTTGAAG
TCCTTGTTCTTCTTGAAAGAATGGAACTTGAACCATCTCAAGCAGATCAACTCTGTTCTC
ATCACTTGTGGCCTCTCACATCACAGTTCCTTTCTCAGCAAACTGCTCCGCCTTTGCTTA
CTACTTCCTTCGTTCCCATCTTCTTATGCTTCTTCTCTCTTCAATCAAATAAAAAGACCC
ACCATACATACATGGAACGTCATGTTCAAAGGCTTTTCTATTACTTCACACCCTCAAAAG
TCCATTAATTTCTATATGCAAATGCGCCAAGATGAGATTTTTCCAAATAAACATACCTTC
CCTTTGCTTCTAAGAGCCTTTTGTAAAGCCAAAAATGAAAACCCTCTTCTTCTTTTAGCT
CAAATATTTAAGTTCGGATACAATTCTGACCAGTTTGTGCAGAATTCTTTGGTTTTTAGT
TTGGCTAGTAGTGCGTACGTTGATCTTGCACGCCAAGTGTTTGTTGAAATTACGAACAAG
GATGTGCTTTCTTATACTGCTTTAATTAATGGGTATGCCAGGAATGCTCTGCCCGTTAAA
GCTTTGGAGCTTTTTGTGGAGATGAGGCAAGCAGAAGTTAAGGTGGATGAGGTGGCTGTT
GTAGCAGCTCTTTCTCCTGCTGGAACATTGAAATTTGTTTGGTTTGGTAGATGTCTTCAT
GGTTTCTATGTGGCGGCTGGGAGGGTTTCTAGTGATGTTTACATTGGTAGCGCTCTTGTT
GATATGTATGCTAAATGTGGATTTTGTGATGATGCCTTGAAAGTTTTTGAAGACATGCCT
TACAAGAATCTTATTTCTTGGAGTGCTATGATTGCTGGATTTGTACACTGTAATAGGTTA
AGGGAAGCACTCTGTGTTTTCCAAGAGATGCTGGCTGGAAAGGTTGTTCCCAATCAAGTG
ACATTGACAAGTGTTCTCAGTGCATGTACTAGGCTTGGGGCACTGGAGCAGGGCCGATGG
GTTGCTCGTTATATAAAAGCACATAACATAGAAATCAATACAGCACTTGGCACTGCTTTG
ATAGATATGTATGCAAAGTGTGGGTGCATCGACGAGGCATTATTGGTTTTCGAGAAGTTA
CCAGAAAAAGGTGTTTATGTATGGACTGCTATGATCAATGGCTTGGCAACACATGGTGAT
GCAGAGAAGTCCTTGGCCTTCTTCTTAGAAATGTTGAGCAACGGTTTAAGACCCAATGAA
GTAACTTTCGTTGGCATTCTCGGTGCATGTTCTCATGGAGGACTCGTGGATGAAGGACTG
CGGTTGTTCTCATTAATGGACCAAGTTTATGGTGTAAAACATAATATAGATCATTATGGC
TGTATGGTCGATCTCCTAGGCCGGGCAGGGTATTTGGAAGAAGCTTGTAGAGTGATCCAA
GACATGCCAATGGAACCTACTCCTAGCATATGGGGCGCTCTCTTTGGTTCTTGCATGATT
CACAAGGCTTATGAATTAGGTGAATGGATAGGAAGACATCTAATCGACATACAGCCTTAT
CATAGTGGCAGATATACACTCTTGGCAAATTTGTATTTGACTTGTAAAAACTGGGAAGGG
GTAGCTCAAGTTAGGAAACTGATGAGAGAGATGGGTGTGGAAAAGATCCGGGGGTGTAGT
TGGATTGAATTGAACGGGGAAGTGCATGAGTTTATTGCGTTTGATGGTTCACATGCTAAG
TCTGAATACATTTACACCGTTTTAGATAACCTAGTCGGTCAAATACAACACATTACTATT
TTTCCAGATGCTGATTCTTTAGTTCTTGAGAATAGCTGA

Peptide Sequence

PEP ID

XP_016479211.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g50270-like [Nicotiana tabacum]
Sequence

MLQRSFDSPPLFPALNEQLKSLFFLKEWNLNHLKQINSVLITCGLSHHSSFLSKLLRLCL
LLPSFPSSYASSLFNQIKRPTIHTWNVMFKGFSITSHPQKSINFYMQMRQDEIFPNKHTF
PLLLRAFCKAKNENPLLLLAQIFKFGYNSDQFVQNSLVFSLASSAYVDLARQVFVEITNK
DVLSYTALINGYARNALPVKALELFVEMRQAEVKVDEVAVVAALSPAGTLKFVWFGRCLH
GFYVAAGRVSSDVYIGSALVDMYAKCGFCDDALKVFEDMPYKNLISWSAMIAGFVHCNRL
REALCVFQEMLAGKVVPNQVTLTSVLSACTRLGALEQGRWVARYIKAHNIEINTALGTAL
IDMYAKCGCIDEALLVFEKLPEKGVYVWTAMINGLATHGDAEKSLAFFLEMLSNGLRPNE
VTFVGILGACSHGGLVDEGLRLFSLMDQVYGVKHNIDHYGCMVDLLGRAGYLEEACRVIQ
DMPMEPTPSIWGALFGSCMIHKAYELGEWIGRHLIDIQPYHSGRYTLLANLYLTCKNWEG
VAQVRKLMREMGVEKIRGCSWIELNGEVHEFIAFDGSHAKSEYIYTVLDNLVGQIQHITI
FPDADSLVLENS

Transcript Sequence

Gene sequence data has not been registered.